for transfer function output after compiling the FORTRAN code, at the command line type:

./run_talas_CH.sh 201
./run_talas_CH.sh 202
./run_talas_CH.sh 203

./run_tmack_CH.sh 211
./run_tmack_CH.sh 212
./run_tmack_CH.sh 213

./run_tqueb_CH.sh 233
./run_tqueb_CH.sh 234
./run_tqueb_CH.sh 235

for reconstruction output after compiling the FORTRAN code, at the command line type:

./run_recon_canalas_CH.sh 203
./run_recon_canmack_CH.sh 213
./run_recon_canqueb_CH.sh 235

the 201,202,203 etc. numbers relate to the configuration files for different calibration/verification combinations. 
203,213,235 use the full calibration period for the reconstruction.
